منابع مشابه
tagtog: interactive and text-mining-assisted annotation of gene mentions in PLOS full-text articles
The breadth and depth of biomedical literature are increasing year upon year. To keep abreast of these increases, FlyBase, a database for Drosophila genomic and genetic information, is constantly exploring new ways to mine the published literature to increase the efficiency and accuracy of manual curation and to automate some aspects, such as triaging and entity extraction. Toward this end, we ...
متن کاملText Mining Through Semi Automatic Semantic Annotation
The Web is the greatest information source in human history. Unfortunately, mining knowledge out of this source is a laborious and errorprone task. Many researchers believe that a solution to the problem can be founded on semantic annotations that need to be inserted in web-based documents and guide information extraction and knowledge mining. In this paper, we further elaborate a tool-supporte...
متن کاملProtein Family Databases: Text-mining & Annotation
In recent years the text-mining and bioinformatics communities have worked together to address the problem of finding pertinent information within the vast volume of biomedical literature. In this paper, we focus on a specific bio text-mining issue: the annotation of protein family databases. We describe an evaluation performed on an in-house text-mining tool, we report how successful it was in...
متن کاملText-mining-assisted biocuration workflows in Argo
Biocuration activities have been broadly categorized into the selection of relevant documents, the annotation of biological concepts of interest and identification of interactions between the concepts. Text mining has been shown to have a potential to significantly reduce the effort of biocurators in all the three activities, and various semi-automatic methodologies have been integrated into cu...
متن کاملAssisted Curation: Does Text Mining Really Help?
Although text mining shows considerable promise as a tool for supporting the curation of biomedical text, there is little concrete evidence as to its effectiveness. We report on three experiments measuring the extent to which curation can be speeded up with assistance from Natural Language Processing (NLP), together with subjective feedback from curators on the usability of a curation tool that...
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ژورنال
عنوان ژورنال: Genome Biology
سال: 2008
ISSN: 1465-6906
DOI: 10.1186/gb-2008-9-2-r31